bioCADDIE Workshop: "Metadata Mapping for Data Repositories" & "Discovering Data by CDE"

These bioCADDIE Workshops are held on May 8, 2017 and May 9, 2017 at the Bethesda Marriot Hotel & Conference Center, Pooks Hill Road.

Time Title Presenter(s) Slides Video Recording
"Metadata Mapping for Data Repositories" on May, 8 2017
8:00 - 9:00 Breakfast      
9:00 - 9:30 Introduction Lucila Ohno-Machado, Jared Lyle, Mike Huerta view here  
9:30 - 10:00 Demonstration of the DataMed Prototype Hua Xu & CDT view here  
10:00 - 10:30 DataMed Ingest System Jeff Grethe & CDT view here  
10:30 - 10:45 Break      
10:45 - 11:15 Data Tag Suite (DATS) - Introduction  Susanna-Assunta Sansone, Philippe Rocca-Serra, Alejandra Gonzalez-Beltran view here watch here
11:15 - 12:00 Example Repository Mapping: ImmPort, ICPSR, OMOP John Campbell, Jared Lyle, Hyeon-Eui Kim ImmPort
ICPSR
OMOP
ImmPort
ICPSR
OMOP
12:00 - 1:00 Lunch      
1:00 - 1:30 DATS-Core Overview Philippe Rocca-Serra, Alejandra Gonzalez-Beltran view here watch here
1:30 - 2:30 DATS-Core exercise and debrief All    
2:30 - 2:45 Break      
2:45 - 3:15 DATS-Extended Overview Philippe Rocca-Serra, Alejandra Gonzalez-Beltran view here watch here
3:15 - 3:45 DATS-Extended exercise and debrief All    
3:45 - 4:30 Summary and Action items      
"Discovering Data by CDE" on May 9, 2017
8:00 - 9:00 Breakfast      
9:00 - 9:45 Welcome and Introduction  Lucila Ohno-Machado, George Alter view here watch here
9:45 - 10:15 Demonstrations: NLM CDE, DataMed Liz Amos, Hua Xu view here CDE
DataMed
10:15 - 10:30 Coffee Break      
10:30 - 12:00 What functionality would benefit reasearchers searching for data that includes CDEs?
Break-outs for Group Dicussion
All   watch here
12:00 - 1:00 Lunch      
1:00 - 3:00 Mapping the landscape of metadata standards in the life and biomedical sciences: BioSharing Susanna Sansone view here watch here
1:00 - 3:00 bioCADDIE metadata standards - DATS, Alejandra Gonzalez-Beltran, Philippe Rocca-Serra view here watch here
1:00 - 3:00 Mapping other standards to DATS(OMOP)  Hyeon-Eui Kim view here watch here
1:00 - 3:00 Mapping dbGAP to PhenX Helen Pan  view here watch here
1:00 - 3:00 Standardized vocabularies and terminologies
Standardized assessment instruments: scales, forms, multi-item instruments
Lisa Lang, Liz Amos, In-Hye Cho view here watch here
1:00 - 3:00 BRICS presentation Matt McAuliffe   watch here
3:00 - 3:15 Coffee Break      
3:15 - 4:30  Improving the Annotation of datasets with CDEs Mark Musen, John Graybeal view here  
4:30 - 5:00 Conclusions and Next Step