bioCADDIE All-Hands Meeting

bioCADDIE, as part of the National Institutes of Health’s (NIH) Big Data to Knowledge (BD2K) program, is committed to building a prototype data discovery index that will enable finding, accessing, and citing biomedical big data. The All-Hands Meeting will give us the opportunity to review bioCADDIE activities and progress to date, as well as discuss our upcoming plans and engage with the community. 

Date: Friday, December 4, 2015

Location: Medical Education and Telemedicine Building, UC San Diego, La Jolla, CA (map)

Walking directions from the Sheraton Hotel to the Medical Education and Telemedicine building.

To join in remotely, please use the following ReadyTalk information:

Web: (access code 2201876)
Audio: 1-866-740-1260 (access code 2201876) (US)
Click here for international call in numbers (access code 2201876)

To register for the meeting, please click here.  

Below is the finalized agenda for the All-Hands Meeting.

To read the biographies of the speakers for this event, please click here.




Presentations (pdf will open in new window) Videos

8:30 – 9:30 AM

Steering Committee Meeting (ROOM 229)

Lucila Ohno-Machado


8:30 – 9:30 AM

Breakfast and Registration


9:30 AM

Welcome and Introduction to bioCADDIE (Auditorium)

Lucila Ohno-Machado

 View Slides View Video

9:50 AM

DDI Prototype

Hua Xu/Jeffrey Grethe

 View Slides  

11:00 AM

WG3 - Metadata

Susanna Sansone

 View Slides View Video

12:00 PM



1:00 PM

WG2 - Data Identifiers Recommendation

Jeffrey Grethe

 View Slides View Video

1:10 PM

WG4 - Use Cases and Testing Benchmarks

Hua Xu

 View Slides View Video

1:40 PM

WG5 - Dataset Citation Metrics

Jeffrey Grethe/Susanna Sansone

 View Slides View Video

1:50 PM

WG6 - Criteria for Repository Inclusion

Lucila Ohno-Machado/Ian Fore

 View Slides View Video

2:00 PM

WG7 - Accessibility Metadata for Datasets

George Alter

 View Slides View Video

2:15 PM

WG8 - Ranking Search Results

Hua Xu

 View Slides View Video

2:25 PM



3:15 PM

Pilot Projects

Gouripeddi, Mungall, Solbrig

 View Slides Gouripeddi
 View Slides Mungall
 View Slides Solbrig

View Video
View Video
View Video

4:00 PM

Supplement: OmicsDI

Eric Deutsch/Henning Hermjakob

Peipei Ping/Susanna Sansone

 View Slides View Video

4:20 PM

Supplement: F11 Data Citation Pilot

Maryann Martone

 View Slides View Video

4:40 PM

Closing Session

Lucila Ohno-Machado